Aptamer-based biosensors: carbon nanomaterial integration for rapid E. coli detection in food safety - mini review
DOI:
https://doi.org/10.5281/zenodo.15520668Keywords:
Foodborne pathogens, aptamer-based biosensors, graphene oxide, nanomaterials, detectionAbstract
Foodborne infections are a major global concern because of the astoundingly high number of diseases they cause each year. A greater number of highly precise and dependable biosensors have been developed in recent decades to bridge the gap between monitoring requirements and the conventional detection techniques now in use. Among these, aptamer-based biosensors have gained significant attention for their high specificity, stability, and adaptability to diverse targets. Aptamers, single-stranded DNA / RNA molecules with intricate three-dimensional structures, exhibit exceptional molecular recognition capabilities. Their chemical synthesis allows precise sequence design and functional modifications, making them ideal candidates for biosensing applications. Detecting Escherichia coli (E. coli), a common foodborne pathogen is critical for ensuring food safety and public health. While traditional methods such as culture techniques and PCR are reliable, they are often time-consuming and unsuitable for real-time, on-site applications. Aptamer-based biosensors offer rapid, sensitive, and portable alternatives, especially when conjugated with nanomaterials like graphene oxide (GO), gold nanoparticles (AuNPs), and carbon nanotubes. These nanomaterials amplify the signals from aptamer-target interactions through their unique electronic and optical properties, significantly enhancing detection performance. However, achieving optimal functionality necessitates the careful optimization of aptamer nucleotide sequences. Sequence attributes such as length, secondary structure, and nucleotide composition play a crucial role in determining binding affinity, stability, and specificity. Tailored sequence modifications enhance the conjugate’s performance, enabling advanced biosensors with superior accuracy and reliability. This integration of aptamers and nanomaterials demonstrates immense potential in developing low-cost, efficient, and scalable detection systems, addressing the urgent need for effective tools in foodborne pathogen monitoring.
Downloads
References
[1] X. Dong, A. Huang, L. He, C. Cai, and T. You, "Recent advances in foodborne pathogen detection using photoelectrochemical biosensors: from photoactive material to sensing strategy," Frontiers in Sustainable Food Systems, vol. 8, p. 1432555, 2024.
[2] M. Ouyang, T. Liu, X. Yuan, C. Xie, K. Luo, and L. Zhou, "Nanomaterials-based aptasensors for rapid detection and early warning of key food contaminants: A review," Food Chemistry, p. 140990, 2024.
[3] Y. Li et al., "The China National Foodborne Pathogen Surveillance System: Twenty Years of Experience and Achievements," Foodborne Pathogens and Disease, vol. 18, no. 8, pp. 519-527, 2021.
[4] I. Bobrinetskiy et al., "Advances in nanomaterials-based electrochemical biosensors for foodborne pathogen detection," Nanomaterials, vol. 11, no. 10, p. 2700, 2021.
[5] R. Deng, J. Bai, H. Yang, Y. Ren, Q. He, and Y. Lu, "Nanotechnology-leveraged nucleic acid amplification for foodborne pathogen detection," Coordination Chemistry Reviews, vol. 506, p. 215745, 2024.
[6] K. Fatemi et al., "Carbon nanomaterial-based aptasensors for rapid detection of foodborne pathogenic bacteria," Analytical Biochemistry, p. 115639, 2024.
[7] Y. Fu et al., "Applications of nanomaterial technology in biosensing," Journal of Science: Advanced Materials and Devices, p. 100694, 2024.
[8] S. Chergui, K. Rhili, S. Poorahong, and M. Siaj, "Graphene oxide membrane immobilized aptamer as a highly selective hormone removal," Membranes, vol. 10, no. 9, p. 229, 2020.
[9] M. R. Kumalasari, R. Alfanaar, and A. S. Andreani, "Gold nanoparticles (AuNPs): A versatile material for biosensor application," Talanta Open, vol. 9, p. 100327, 2024.
[10] N. Anzar, R. Hasan, M. Tyagi, N. Yadav, and J. Narang, "Carbon nanotube-A review on Synthesis, Properties and plethora of applications in the field of biomedical science," Sensors International, vol. 1, p. 100003, 2020.
[11] S. Fathi-Karkan et al., "Biomedical applications of aptamer-modified chitosan nanomaterials: An updated review," International Journal of Biological Macromolecules, vol. 238, p. 124103, 2023.
[12] R. Urmi et al., "Revolutionizing biomedicine: Aptamer-based nanomaterials and nanodevices for therapeutic applications," Biotechnology Reports, p. e00843, 2024.
[13] K. AbouAitah, F. Sabbagh, and B. S. Kim, "Graphene oxide nanostructures as nanoplatforms for delivering natural therapeutic agents: Applications in cancer treatment, bacterial infections, and bone regeneration medicine," Nanomaterials, vol. 13, no. 19, p. 2666, 2023.
[14] X. Deng et al., "Advances in Aptamer-Based Conjugate Recognition Techniques for the Detection of Small Molecules in Food," Foods, vol. 13, no. 11, p. 1749, 2024.
[15] J. H. Luong and S. K. Vashist, "Chemistry of biotin–streptavidin and the growing concern of an emerging biotin interference in clinical immunoassays," ACS omega, vol. 5, no. 1, pp. 10-18, 2019.
[16] L. Tessaro, A. Aquino, A. P. A. de Carvalho, and C. A. Conte-Junior, "A systematic review on gold nanoparticles based-optical biosensors for Influenza virus detection," Sensors and Actuators Reports, vol. 3, p. 100060, 2021.
[17] W. Zhang, W. Li, Y. Song, Q. Xu, and H. Xu, "Bacterial detection based on Förster resonance energy transfer," Biosensors and Bioelectronics, p. 116244, 2024.
[18] B. Thakur et al., "Rapid detection of single E. coli bacteria using a graphene-based field-effect transistor device," Biosensors and Bioelectronics, vol. 110, pp. 16-22, 2018.
[19] K. Wei et al., "Generating robust aptamers for food analysis by sequence-based configuration optimization," Talanta, p. 126044, 2024.
[20] S. Marton, F. Cleto, M. A. Krieger, and J. Cardoso, "Isolation of an aptamer that binds specifically to E. coli," PloS one, vol. 11, no. 4, p. e0153637, 2016.
[21] L. Yang et al., "Aptamer-conjugated nanomaterials and their applications," Advanced drug delivery reviews, vol. 63, no. 14-15, pp. 1361-1370, 2011.
[22] S. Siddiqui and J. Yuan, "Binding Characteristics Study of DNA based Aptamers for E. coli O157: H7," Molecules, vol. 26, no. 1, p. 204, 2021.
[23] H.-Y. Li, W.-N. Jia, X.-Y. Li, L. Zhang, C. Liu, and J. Wu, "Advances in detection of infectious agents by aptamer-based technologies," Emerging Microbes & Infections, vol. 9, no. 1, pp. 1671-1681, 2020.
[24] J. Gong, Y. Sun, H. Du, and X. Jiang, "Research on safety risk control of prepared foods from the perspective of supply chain," Heliyon, vol. 10, no. 3, 2024.
[25] A. H. Gargiulo, S. G. Duarte, G. Z. Campos, M. Landgraf, B. D. Franco, and U. M. Pinto, "Food safety issues related to eating in and eating out," Microorganisms, vol. 10, no. 11, p. 2118, 2022.
[26] M. P. Kabiraz, P. R. Majumdar, M. C. Mahmud, S. Bhowmik, and A. Ali, "Conventional and advanced detection techniques of foodborne pathogens: A comprehensive review," Heliyon, vol. 9, no. 4, 2023.
[27] A. Z. Almenhali and S. Eissa, "Aptamer-based biosensors for the detection of neonicotinoid insecticides in environmental samples: A systematic review," Talanta, vol. 275, p. 126190, 2024.
[28] V. Léguillier, B. Heddi, and J. Vidic, "Recent Advances in Aptamer-Based Biosensors for Bacterial Detection," Biosensors, vol. 14, no. 5, p. 210, 2024.
[29] S. Takallu et al., "Nanotechnology improves the detection of bacteria: Recent advances and future perspectives," Heliyon, 2024.
[30] L. F. Yang, M. Ling, N. Kacherovsky, and S. H. Pun, "Aptamers 101: aptamer discovery and in vitro applications in biosensors and separations," Chemical Science, vol. 14, no. 19, pp. 4961-4978, 2023.
[31] A. Fallah, A. A. I. Fooladi, S. A. Havaei, M. Mahboobi, and H. Sedighian, "Recent advances in aptamer discovery, modification and improving performance," Biochemistry and Biophysics Reports, vol. 40, p. 101852, 2024.
[32] S. Malik et al., "Nanomaterials-based biosensor and their applications: A review," Heliyon, 2023.